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Journal of Theoretical and Computational Chemistry (JTCC) (Popularity:  )
http://www.worldscinet.com/jtcc/jtcc.shtml
Covers the development of fundamental theoretical methodology and computational algorithms to extensive numerical applications to specific scientific problems ranging from gas-phase to condensed phase, and to biological systems.
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Journal of Chemical Theory and Computation (JCTC) (Popularity: )
http://pubs.acs.org/journals/jctcce/
Publishes papers reporting new theories, methodology, and/or important applications in quantum chemistry, molecular dynamics, and statistical mechanics.
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Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta) (Popularity: )
http://link.springer.de/link/service/journals/00214/
Publishes papers in all fields of theoretical chemistry, computational chemistry, and modeling.
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Journal of Chemical Information and Modeling (JCIM) (Popularity: )
http://pubs.acs.org/journals/jcisd8/
Covers topics such as database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics ...
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Journal of Molecular Modeling (Popularity: )
http://link.springer.de/link/service/journals/00894/tocs.htm
Publishes articles on Life Science Modeling (including QSAR, data mining/bioinformatics, structure and substructure search), Materials Modeling, New Methods, and Computational Chemistry in an interdisciplinary manner and within very short publication ...
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Journal of Computer Aided Chemistry (Popularity: )
http://www.chemistry.or.jp/journals/jcac/
Published by the Division of Chemical Information and Computer Science, The Chemical Society of Japan.
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Journal of Molecular Structure: THEOCHEM (Popularity: )
http://www.sciencedirect.com/science/journal/01661280
Publishes research related to the theory and modelling of molecular systems, including electronic structure, ab initio and semiempirical; graphical approaches to structure and properties; molecular modelling; reaction dynamics and scattering; ...
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Computational Chemistry Journals (Popularity: )
http://www.ch.cam.ac.uk/c2k/cj/comp.html
A comprehensive list of journals known to publish articles about computational chemistry, even when the main focus of the journal is not computational chemistry.
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Journal of Chromatographic Science (JCS) (Popularity: )
http://www.j-chrom-sci.com
Monthly international scientific journal presenting information concerning the theory and practice of chromatography.
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Journal of Computer Chemistry, Japan (JCCJ) (Popularity: )
http://www.jstage.jst.go.jp/browse/jccj/
Published by the Society of Computer Chemistry, Japan.
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Journal of Computer-Aided Molecular Design (Popularity: )
http://www.kluweronline.com/issn/0920-654X
Publishes articles on the theory and the application of computer-based methods in the analysis and design of molecules. This includes theoretical chemistry, computational chemistry, computer and molecular graphics, molecular modeling, ...
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Journal of Molecular Graphics and Modelling (Popularity: )
http://www.sciencedirect.com/science/journal/10933263
Publishes original research on the development and application of molecular modelling in the study of molecular structure, function, interactions and design, including computational chemistry, protein and polymer engineering, pharmaceutical design, ...
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Computational Biology and Chemistry (Popularity: )
http://www.sciencedirect.com/science/journal/14769271
Publishes original papers and reviews in all areas of computational life sciences, such as nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and ...
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Molecular Simulation (Popularity: )
http://www.tandf.co.uk/journals/titles/08927022.asp
Covers all aspects of research related to, or of importance to, molecular modelling and simulation (including informatics, theoretical and experimental work).
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Network Science (Popularity: )
http://www.netsci.org
Monthly journal containing peer-reviewed articles, industry news and links. The Web Journal of Technology in Pharmaceutical Research and Development.
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Full-Text Journals in Chemistry (Popularity: )
http://www.abc.chemistry.bsu.by/current/fulltext.htm
Directory of permanently and temporarily available chemical and biochemical journals with a free access to full texts of papers.
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NH3.COM (Popularity: )
http://www.nh3.com
Dedicated to bringing you the latest and most important information about Anhydrous Ammonia.
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International Journal for the Philosophy of Chemistry (Popularity: )
http://www.hyle.org
Articles deal with epistemological, methodological, foundational, and ontological problems of chemistry and its subfields.
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Journal of Chemical Education (Popularity: )
http://jchemed.chem.wisc.edu
Delivers a wide range of articles and activities useful in both the classroom and laboratory.
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Atmospheric Chemistry and Physics (ACP) (Popularity: )
http://www.atmos-chem-phys.net/volumes_and_issues.html
Journal dedicated to the publication and discussion of high quality studies investigating the Earth's atmosphere and the underlying chemical and physical processes.
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