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Sponsored Links:
Transcription Element Search Software (TESS) (Popularity:  )
http://www.cbil.upenn.edu/tess/
Very helpful software for locating and displaying transcription factor binding sites within DNA sequences - from the Univ. of Penn.
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NEBcutter (Popularity: )
http://tools.neb.com/NEBcutter/index.php3
On-line DNA sequence tool to find large, non-overlapping, open reading frames and sites for all restriction enzymes-from New England BioLabs.
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Webcutter 2.0 (Popularity: )
http://users.unimi.it/~camelot/tools/cut2.html
Free, online software for restriction mapping nucleotide sequences.
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WatCut (Popularity: )
http://watcut.uwaterloo.ca/watcut/watcut/template.php
Restriction analysis of DNA, and silent mutations finding in oligonucleotides that will generate new restriction sites.
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EMBL Bioinformatic Harvester (Popularity: )
http://harvester.embl.de
Collection of human (swall) proteins, crossreferences to major prediction servers. Supported predictions from: smart, string, blast, swall, mapview, sosui, ipsort and ncbi conserved domains.
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GenomeScan (Popularity: )
http://genes.mit.edu/genomescan.html
Prediction of locations and exon-intron structures in genomic sequences, incorporating protein homology information when predicting genes from DNA sequence. Webserver at the MIT.
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ClustalW (Popularity: )
http://www.ebi.ac.uk/clustalw/
EBI server for multiple sequence alignment on the web
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TreeTop (Popularity: )
http://www.genebee.msu.su/services/phtree_reduced.html
Multiple sequence alignment based phylogenetic tree prediction program.
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Genepop on the Web (Popularity: )
http://wbiomed.curtin.edu.au/genepop/
Online version of the program for populational genetics.
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INCBI Irish National Centre for BioInformatics (Popularity: )
http://acer.gen.tcd.ie/
Hosts Irish embnet node, Gives links to Database browsing and interrogation at SRS, European (EBI) servers, Blast server for parasite genomes (EBI), US (NCBI) servers, Protein structure prediction, PredictProtein Server ...
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TRANSFAC-The Transcription Factor Database (Popularity: )
http://www.gene-regulation.com/pub/databases.html#transfac
Very thorough compilation of transcriptional regulatory protein factors & their cognate gene promoter elements along with DNA sequence search & analysis programs - from GBF, Braunschweig, Germany.
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Transterm - a database of mRNA regions and motifs (Popularity: )
http://uther.otago.ac.nz/Transterm.html
Transterm - an interactive database of mRNA regions and motifs from all species and genomes. Users can browse the pre-computed data tables, search the sequence databases or search their own ...
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ProtFun (Popularity: )
http://www.cbs.dtu.dk/services/ProtFun/
Ab initio predictions of protein function from protein sequence. The method works by integrating various predicted post-translational and localizational aspects of the proteins submitted.
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Entrez Browser (Popularity: )
http://www.ncbi.nlm.nih.gov/Entrez/
Retrieves molecular biology data and bibliographic citations from the NCBI's integrated databases.
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Betapred (Popularity: )
http://imtech.res.in/raghava/betatpred
Prediction of beta turns and their types using statistical algorithms. 5 different methods including Chou-Fasman, Thornton's PRs, Gorbturn, and a consensus of all methods.
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BioGIS: Israel Biodiversity Information System (Popularity: )
http://www.biogis.huji.ac.il/
Israel Biodiversity Information System (BioGIS) is a Geographical Information System established to create a national database of the flora and fauna of Israel. The system is open to the public ...
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3D-PSSM Fold Recognition (Popularity: )
http://www.sbg.bio.ic.ac.uk/~3dpssm/
Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
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SWISS-PROT + TrEMBL (Popularity: )
http://www.ebi.ac.uk/swissprot/
The SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which contains the translations of all coding sequences ...
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Sequence Analysis (Bielefeld University Bioinformatics Server) (Popularity: )
http://bibiserv.techfak.uni-bielefeld.de/intro/seqdept.html
Collection of sequence analysis tools.
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Center Structural Biology: Programs and Tools (Popularity: )
http://www.csb.yale.edu
User guides and worked examples for software applications in structural and molecular biology - from Yale Univ.
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