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Sponsored Links:
The Chemistry Development Kit (Popularity:  )
http://cdk.sourceforge.net/
Java based computational chemistry package which supports chemical structure drawing and the graphical layout of 2D chemical structures.
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Open Babel (Popularity: )
http://openbabel.sourceforge.net/
Open-source C++ library for molecule file conversion and pattern matching.
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JOELib (Popularity: )
http://www-ra.informatik.uni-tuebingen.de/software/joelib/index.html
Java computational chemistry library which supports file conversion, SMARTS substructure search, QSAR descriptor calculation and process/filter methods for molecular data sets.
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The Octet Project (Popularity: )
http://octet.sourceforge.net
Open-source, object oriented cheminformatics framework written in Java.
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PerlMol (Popularity: )
http://www.perlmol.org/
Free Perl modules for molecular chemistry. Tutorial, reference manual, downloads and mailing list.
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Frowns (Popularity: )
http://frowns.sourceforge.net/
Free chemoinformatics toolkit geared toward rapid development of chemistry related algorithms. Written in Python with a small portion written in C++.
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CACTVS System (Popularity: )
http://www2.chemie.uni-erlangen.de/software/cactvs/
A distributed client/server system for the computation, management, analysis and visualization of chemical information of any type. Tool collection for several Unix flavors; some of the tools are distributed freely ...
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Software Development Lohninger (Popularity: )
http://www.lohninger.com/
This site offers software and programming components for Delphi and C++Builder covering mathematics, statistics, scientific graphing, and chemistry.
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JChem (Popularity: )
http://www.jchem.com
A Java based development tool for building portable chemical information systems.
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