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Sponsored Links:
B: On-line Molecular Modeling (Popularity:  )
http://www.scripps.edu/case/Biomer/
"B" (formerly known as Biomer) is a Java-based molecular modeling program for small organic molecules and biopolymers. Supports nucleic acids (DNA/RNA), polypeptides, polysaccharides, the AMBER force field, geometry optimization, simulated ...
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Harvard Microchemistry & Proteomics Facility (Popularity: )
http://www.mcb.harvard.edu/Microchem
William Lane's lab at Harvard provides expertise and core technologies in proteomics for the Harvard community and researchers worldwide. These include mass spectrometry, high sensitivity peptide sequencing and protein identification, ...
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AMMP (Popularity: )
http://www.cs.gsu.edu/~cscrwh/ammp/ammp.html
A free program suite for molecular mechanics, dynamics and modeling with some special features like docking or ab initio DFT calculations. Runs under Linux/Unix and Win9x. The site provides access ...
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AutoDock (Popularity: )
http://www.scripps.edu/pub/olson-web/doc/autodock/
A suite of automated docking tools. It is designed to predict how small flexible molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
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Cyberlipid Center (Popularity: )
http://www.cyberlipid.org/
Information on lipids, their history, structure, use and analysis.
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Bionet.software.x-plor (Popularity: )
http://www.bio.net/hypermail/X-PLOR/
Archive of newsgroup for X-PLOR software for 3D macromolecular structure determination.
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Clinical Proteomics (Popularity: )
http://www.humanapress.com/JournalDetail.pasp?issn=1542-6416&txtCatalog=HumanaJournals&txtProductID=1542-6416
Clinical proteomics, The Journal of Translational Molecular Medicine, is the application of proteomic technologies and informatic tools to clinical material. The translational nature of this technology provides unique challenges and ...
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NAMD (Popularity: )
http://www.ks.uiuc.edu/Research/namd/
A parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD is distributed free of charge and includes source code.
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Protein Dynamics, Inc. (Popularity: )
http://proteindynamics.com/
Molecular dynamics simulation programs for proteins, DNA, and RNA, including 3D viewing of molecules. Offers downloadable demonstration version, from Milpitas California.
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EGO VIII (Popularity: )
http://www.lrz-muenchen.de/~heller/ego/egointro.html
A program to perform molecular dynamics simulations on parallel as well as on sequential computers.
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Ghemical (Popularity: )
http://www.uku.fi/~thassine/ghemical/
An easy-to-use molecular editor and modeling package with all-atoms molecular mechanics, reduced protein models and links to many common chemistry programs. Ghemical is released under the GNU GPL and includes ...
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IMB Jena Image Library of Biological Macromolecules (Popularity: )
http://www.imb-jena.de/IMAGE.html
Resource for visualization and analysis of 3D-biopolymer structures; proteins, nucleic acids, carbohydrates, and small molecule ligands. Combines experimental and computer generated models, maintained in Germany.
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ATP Synthase (Popularity: )
http://www.atpsynthase.info
ATP synthase is a key enzyme in bioenergetics that interconverts two main "energy currencies" of a living cell: ATP and protonmotive force. In 1997 Nobel prize was awarded for clarification ...
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LumiCyte (Popularity: )
http://www.lumicyte.com
LCI is committed to generating a platform for MALDI-MS that meets a growing need for the integration of separation techniques and sample analysis on a single surface for proteomics applications
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TECAN (Popularity: )
http://www.tecan.com
The group at Tecan Proteomics has coupled cutting edge scientific expertise in industrial-scale proteomics research with the core competencies of Tecan to develop and offer functional workstations to solve real ...
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Agilent: Proteomics (Popularity: )
http://www.chem.agilent.com/Scripts/IDS.asp?lPage=1622
Agilent offers targeted proteomics solutions for applications ranging from purification to sizing to identification, making even difficult protein measurement routine.
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GeneProbes.org (Popularity: )
http://www.geneprobes.org/
Resource introducing DNA probe technologies, listing conferences, workshops and references with focus on marine biotoxins from Nelson, New Zealand.
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NetNglyc (Popularity: )
http://www.cbs.dtu.dk/services/NetNGlyc/
N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.
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BUMC Cardiovascular Proteomics Center (Popularity: )
http://www.bumc.bu.edu/Departments/HomeMain.asp?DepartmentID=382
The CPC is funded by the NIH/NHLBI to analyze protein variations caused by oxidative stress, a condition influenced by smoking, exposure to ionizing radiation, and other lifestyle and environmental processes.
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Montreal Proteomics Network (Popularity: )
http://www.rpmpn.mcgill.ca/
A network of over 75 researchers whose goal is to identify, localize and characterize every protein in every organelle of the mammalian cell.
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