Bionet.software.x-plor (Popularity: ): Archive of newsgroup for X-PLOR software for 3D macromolecular structure determination. NAMD (Popularity: ): A parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD is distributed free of charge and includes source code. AMMP (Popularity: ): A free program suite for molecular mechanics, dynamics and modeling with some special features like docking or ab initio DFT calculations. Runs under Linux/Unix and Win9x. The site provides access ... EGO VIII (Popularity: ): A program to perform molecular dynamics simulations on parallel as well as on sequential computers. B: On-line Molecular Modeling (Popularity: ): "B" (formerly known as Biomer) is a Java-based molecular modeling program for small organic molecules and biopolymers. Supports nucleic acids (DNA/RNA), polypeptides, polysaccharides, the AMBER force field, geometry optimization, simulated ... AutoDock (Popularity: ): A suite of automated docking tools. It is designed to predict how small flexible molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. Ghemical (Popularity: ): An easy-to-use molecular editor and modeling package with all-atoms molecular mechanics, reduced protein models and links to many common chemistry programs. Ghemical is released under the GNU GPL and includes ... Folding@home (Popularity: ): It is a distributed computing project which studies protein folding, misfolding, aggregation, and related diseases. YASARA (Popularity: ): (Yet Another Scientific Artificial Reality Application) is an interactive real-time molecular dynamics program. SWISS-MODEL (Popularity: ): SWISS-MODEL is an Automated Protein Modelling Server running at the GlaxoWellcome Experimental Research in Geneva, Switzerland.