Bionet.software.x-plor (Popularity: ): Archive of newsgroup for X-PLOR software for 3D macromolecular structure determination. NAMD (Popularity: ): A parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD ... AMMP (Popularity: ): A free program suite for molecular mechanics, dynamics and modeling with some special features like ... EGO VIII (Popularity: ): A program to perform molecular dynamics simulations on parallel as well as on sequential computers. B: On-line Molecular Modeling (Popularity: ): "B" (formerly known as Biomer) is a Java-based molecular modeling program for small organic molecules ... AutoDock (Popularity: ): A suite of automated docking tools. It is designed to predict how small flexible molecules, ... Ghemical (Popularity: ): An easy-to-use molecular editor and modeling package with all-atoms molecular mechanics, reduced protein models and ... Folding@home (Popularity: ): It is a distributed computing project which studies protein folding, misfolding, aggregation, and related diseases. Amber (Popularity: ): A general purpose molecular mechanics and molecular dynamics package with the capability to compute free-energy ... YASARA (Popularity: ): (Yet Another Scientific Artificial Reality Application) is an interactive real-time molecular dynamics program.