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Tree Puzzle |
Popularity:  Hit: 1633 | Visit: 98 |
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TreeMap (Popularity: ): Experimental program for comparing host and parasite trees.
TreeView (Popularity: ): Simple program for displaying phylogenies.
Component (Popularity: ): For analysis of phlyogenies. Includes a wide range of randomisation methods, consensus methods, tree comparison measures, and calculates reconciled trees. Now aging, and available only for Windows machines, but still ...
PHYLIP (Popularity: ): Joe Felsenstein's suite of programs implementing perhaps the widest range of phylogenetic inference package. The most widely distributed phylogeny software. Includes distance, likelihood and parsimony methods for a wide range ...
Phylodendron (Popularity: ): Java application for drawing phylogenetic trees. Allows you to save in various formats, print, edit, modify, and adorn the tree, and should work on any java runtime platform.
MacClade (Popularity: ): A powerful Macintosh package for phylogenetic analysis. Not intended as a stand-alone tool to infer phylogeny, but excels in studying character evolution. Also provides tools for entering and editing data ...
GeneTree (Popularity: ): Uses reconciled trees to compare gene trees and species trees, explaining incongruence between the phylogenies by postulating horizontal transfer, gene duplication and loss events. Reprints of papers describing the methods ...
Nona - A Quick Guide to the Commands (Popularity: ): A brief overview of using Nona for phylogenetic analysis.
Phylo-Win (Popularity: ): Graphical color interface for molecular phylogenetic inference. It performs neighbor-joining, parsimony, and maximum likelihood methods and bootstrap with any of them.
PAML (Popularity: ): Phylogenetic analyses of DNA or protein sequences using maximum likelihood.
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